Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID9555_PtRNAdb
Plant SourceArachis ipaensis     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B05.trna114
tRNA locuschr-B05 : 86093401 - 86093330 (-)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Arachis_ipaensis plant by clicking on the isoacceptor]

IsodecoderTTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTG isodecoder in Arachis_ipaensis plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TGGGGCGTCGCCAAGCGGTAAGGCATCGGATTTTGGTCCCACCATTCGGAGGTTCGAATCCTTCCGTCCTAG
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>>>..............<<<<<.>>.......<<...<<<<<<<.
Upstream sequence (upto 100nt)
CGTAATGATCAATAATTTCAGTTTTATTCTATTCTATATCTATATGGATATTAAACTCCCAGCAACATTAATAGTGTTTATGAATGTCGAATAAAAAAAA
Downstream sequence (upto 100nt)
AGCATATCCATTCATGATGTATATCCTATTTGAATAAAAATTGTATCTCGGGATAAAAATGACCCTTTTTTAATCATTCGTTTATAATCTAAATAGAGTC
Mature tRNA
UGGGGCGUCGCCAAGCGGUAAGGCAUCGGAUUUUGGAUUCGGAGGUUCGAAUCCUUCCGUCCUAG
Intron Sequence
TCCCACC
Intron Position37-43
Infernal Score23.5
HMM Score14.60
Secondary structure Score8.90