Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID95445_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-7D.trna57
tRNA locuschr-7D : 94120427 - 94120623 (+)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderGTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
TCCTCGGTAGCTCAGTGGTAGAGCGGTCGGCTGTTTGCTTCGTCGACCCCCGCTTTCGCGGTTGCTTCCCTCTAAGGCAGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGGACTGGTCGTAGGTTCGAATCCTACTTGGGGAG
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>.>....................................................................................................................................<.<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TACGATATGTGGATTAGTAGAATTTAGGCGCACTTTTTGGATTTTCGGTCTGCAGTTGGTTGGGCCAAAGAACGAGAGTCAGCTTCCTTAAGTCCGTTCT
Downstream sequence (upto 100nt)
ATTTGATTCATTCAGAATTCGAATTGATAGTTATAGCTTTTCTGACTAGCGACCCCTGTCCTTCTCCTTTTTTTTCATTTTTTTCTCTGTGGACCGAGGA
Mature tRNA
UCCUCGGUAGCUCAGUGGUAGAGCGGUCGGCUGUUUUCGGACUGGUCGUAGGUUCGAAUCCUACUUGGGGAG
Intron Sequence
GCTTCGTCGACCCCCGCTTTCGCGGTTGCTTCCCTCTAAGGCAGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGC
Intron Position37-161
Infernal Score51.3
HMM Score39.00
Secondary structure Score12.30