Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID93872_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-6D.trna235
tRNA locuschr-6D : 455932817 - 455932969 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGCAGCGAAGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTGCATTGAGCGATCCCGTGGCTGACGGTGGGCCGGCGCACGTTGAGGATAAATATCTCATGAGCTAGTGAGTAATCCTGAGGTCGAGAGTTCGAGCCTCTCTCGCCCCA
tRNA secondary structure
>>>..>>>>....>>>>.........<<<<.>>>>....................................................................................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TACTGCTGCTTATTACTGTAGTTATCTGCAACCAACAACATGTGTGAAAATATGCATGGTAGAGTACTGGTTATTAGTGAATATAAAGGAGGTTGGAGAT
Downstream sequence (upto 100nt)
ATTCCTTTTTCCACTTTTGTTTCCTGTCCGTCTGCCTATAAAAATGCCTGAATCATTCGTCAGACACCGACGGGGTGGTGGCGCAGTTGGCTAGCGCGTA
Mature tRNA
GGGCAGCGAAGUGGCGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCGCCCCA
Intron Sequence
GCTGCATTGAGCGATCCCGTGGCTGACGGTGGGCCGGCGCACGTTGAGGATAAATATCTCATGAGCTAGTGAGTA
Intron Position43-117
Infernal Score47.5
HMM Score34.20
Secondary structure Score13.30