Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID93721_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-6B.trna557
tRNA locuschr-6B : 115069746 - 115069658 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGTGGCGACGCAGTTGGCTAGCCCGTAGGTCTCATAGCTATGACGTGAGTGATCCTAAGGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>....>>.........<<...>>>>........................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CGATGGATGAACCAGCTGATTTGGAAAGTGTTGATCTTTGCTTAATCTGAACCCATGAAATTGTTATGAAGAGATGTTATTTCTCCATTAATCCAACAAA
Downstream sequence (upto 100nt)
CCTAAAATTGGGCTTGTGATGACGAAACGCTCGGTGACAACTTGGGTCGTTACACCTACATCTGAATCATCAGGTGAAATTGAGAAAATCTGAACCGGTC
Mature tRNA
GGGGUGGCGACGCAGUUGGCUAGCCCGUAGGUCUCAUAAUCCUAAGGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTATGACGTGAGTG
Intron Position39-53
Infernal Score39.4
HMM Score19.60
Secondary structure Score19.80