Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID93645_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-6B.trna474
tRNA locuschr-6B : 264840433 - 264840250 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderGAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAG isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTTCTGGTAGCTCAGCTGGTTAGAGCAAAACAAGAAACGGATTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTGGACTGCAAATCCTTTTTTTCTTGTTTCAGTGGGAAGAGCAAGGGGCATTGCCCTGGAAATCCTTCAGTGGTTCGAATCCACATCTGAGCA
tRNA secondary structure
>>>>.>>..>>>>.........<<<<............>>>................................................................................................................<<<....>>>>.......<<<<.<<.<<<<.
Upstream sequence (upto 100nt)
CGAGGGCCGTCCAGTCCCTGGCCGGCTCTCGGTTCTTGAGCAAGCTCCTCCGCTGCAGGTAGGATGCTCATAGATGAAGAAAAGAGACTTTAGGCAAGTG
Downstream sequence (upto 100nt)
TCTTTTTTCGGTATGCCGCCCCGCGAGGAAGGAGTGCCGCGAGGAGAGCGAGAGAACGAAGTGGGCTTTGGTGATGTCGGAATGTGCACCTATTTGTATC
Mature tRNA
GUUCUGGUAGCUCAGCUGGUUAGAGCAAAACAAGAAACGGAUUGAGCAUCCUUCAGUGGUUCGAAUCCACAUCUGAGCA
Intron Sequence
AACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTGGACTGCAAATCCTTTTTTTCTTGTTTCAGTGGGAAGAGCAAGGGGCATTGCCCTGGAA
Intron Position48-152
Infernal Score20.5
HMM Score12.50
Secondary structure Score8.00