Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID92836_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5D.trna40
tRNA locuschr-5D : 79865656 - 79865743 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGAGGTATAGCTGAGTGGCTTAAGGCATTGGTTTGCTAGATCGACATACAAGAAGATTGTATCATGGGTTCGAATCCCATTTCCTCCG
tRNA secondary structure
>>>>>.>..>>>...........<<<.>>.>>...............<<.<.<..........>>>>>.......<<<<<<.<<<<<.
Upstream sequence (upto 100nt)
AGAGTCTTTCTCGCTTAGTAAAGAAGAGTACGCGCGCTACGGCTTACACAGTGGATCTTCGGGCAACCAACCCGGCACATCCAATTCCGATCAACAACTT
Downstream sequence (upto 100nt)
GCACGGAAGTAGAACGGGCGGGCGAAATTACATGAGAGAAAGAACCTCAGATTGATGGAGTCCGCCGTCGGACAGAATAGCTGCTTAGTGACTAGGAGCG
Mature tRNA
GGAGGUAUAGCUGAGUGGCUUAAGGCAUUGGUUUGCUAUACAAGAAGAUUGUAUCAUGGGUUCGAAUCCCAUUUCCUCCG
Intron Sequence
GATCGACA
Intron Position39-46
Infernal Score37.7
HMM Score30.30
Secondary structure Score7.40