Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID92514_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5B.trna498
tRNA locuschr-5B : 187049024 - 187048946 (-)
IsoacceptorSup

[NOTE: User can view the results of the consensus based study of all the tRNAs of Sup isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderTTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTA isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGTGCTGTGGTGTAGTCGGTTATCTGTTAACCTTACATACACATTATAAAGGTCCCCAGTTCGAGCCTGGGCAGTACCA
tRNA secondary structure
>>>>>>>..>.>>........<<.<.>>>.................<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CCTAAACCAGCCGGATACGATTGGAAAACGGGAATCCAAGCGGGGCCTAAACAATGTTTAGTCTTCTGTGTTCATCAGGTGGGTTAAGTACTCTCAAGAC
Downstream sequence (upto 100nt)
AAATGTTCTCATAATTTTGTTGTCACACTTCAGCAACTTCCGTATAAAGTAGTTCAACTCTATTTTGTGAGCTTCTCTGAAAATCTAGTTGGATAAACAC
Mature tRNA
GGUGCUGUGGUGUAGUCGGUUAUCUGUUAACCUUACAAUAAAGGUCCCCAGUUCGAGCCUGGGCAGUACCA
Intron Sequence
TACACATT
Intron Position38-45
Infernal Score33.7
HMM Score15.30
Secondary structure Score18.40