Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID92323_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5B.trna276
tRNA locuschr-5B : 448326759 - 448326691 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
CCACTGCTCAGTTGGTAAAGGACAAGGCTCTTAACCTTGTGGACATGGATTCAAGCCCCATGATGGGGG
tRNA secondary structure
>>.>>.>>..........<<..>>>>>.......<<<<<.....>>>>.........<<<<...<<<<.
Upstream sequence (upto 100nt)
GACCCGACTCATCACATCATAATGAGCCGGCCCTTGGGGGCTACCAATTGCTCCTGTCAACAATTCAAGGTACACAAATTTTCATTTATCATTGAAGGGT
Downstream sequence (upto 100nt)
TTACATCATATGATGTTATTTTCATTGAAGTATATATCAAGTCCCAACTCAATATTATCTTACTGAGCCGGCCATTGGGGGCTACACCGTTGTTGTTCAA
Mature tRNA
CCACUGCUCAGUUGGUAAAGGACAAGGCUCUUAACCUUGUGGACAUGGAUUCAAGCCCCAUGAUGGGGG
HMM Score18.90
Secondary structure Score10.40