Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID92189_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5B.trna10
tRNA locuschr-5B : 22653954 - 22654030 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
GATCCACTACTCAGTTGGTAGAGAACAAAGCTCTTAACCTTATGGATGTGGGTTCAAGCCCCATGGTGGAGATTACA
tRNA secondary structure
>.>>>>>..>>>........<<<...>>.>.......<.<<......>>>>>.......<<<<<.<<<<<.....<.
Upstream sequence (upto 100nt)
AGACCCGACTCATCACATTGTAATGAGCCGGCCCTTGGGGGTTACCAATTGCTCCTGTAAAAAATTGAAGGTACACAAGCCTTAATCCATTATGTTGACA
Downstream sequence (upto 100nt)
TCATATGATGTTATTATCACTGAATTATATACAAAGTCCCAGCTCAGTATTATCTTACTGAGTCGGCCCTTGGGGGTTACACATTGCTGCTCAAGTCTAC
Mature tRNA
GAUCCACUACUCAGUUGGUAGAGAACAAAGCUCUUAACCUUAUGGAUGUGGGUUCAAGCCCCAUGGUGGAGAUUACA
HMM Score20.90
Secondary structure Score8.80