Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID90763_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-4A.trna390
tRNA locuschr-4A : 619550611 - 619550687 (+)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAC isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTTTGGAGGGCTCGGCTGTAGATGCTCACGTTAGTCTCACACACAAAAGGTCCCCAGTTCGAACCTGGGCTCAGACA
tRNA secondary structure
>>>>>>...>>>>.......<<.<<.....>>.>>.......<<.<<.....>>>>>.......<<<<<.<<<<<<.
Upstream sequence (upto 100nt)
TGGATATGTGGGCTGCCGGTCAGTCCGAGCGTTTGAGGCCCGAGGGGCCGTTTGGGTCAGAAAATCATGACCGGGCGACCCGACCGGGCGTATGAGGCAG
Downstream sequence (upto 100nt)
TTATTTCTTTGAATTTGCACTTGCAGATACTCATATAGAAATCCTATCTATTTTAACTTGTAGCGAACTTTTTTTCTTGCGAATAACTTGTAGCAAACTT
Mature tRNA
GUUUGGAGGGCUCGGCUGUAGAUGCUCACGUUAGUCUCACACACAAAAGGUCCCCAGUUCGAACCUGGGCUCAGACA
HMM Score11.90
Secondary structure Score8.60