Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID89834_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3B.trna631
tRNA locuschr-3B : 761377265 - 761377472 (+)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderGTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCCCGTCTACCTCAGTTGGTAGAGCGCAAGGCTGTTAGGATGTGTTTGGTTCACTCCATGGGCAACCTTGTCTGGCCCAAGCAATCCCAGCCACAGAGGTTCCAAATGGACGCCCGAGATCGCTGCTTGGTCCAAGCAGGTTTGCCTATGTAGTGAACCATACACACCATCAATCTTGTGGTCTTGGGTTCGAGCCCCAAGGTGGGCG
tRNA secondary structure
>>>>>>>...>>>........<<<..>>>>>..............................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GGGAAGATAGTTTGTAAATTAGTGCACATTACCCATCTACCTCACTTGTTAGGCTCTGTGTTTCATTATATAATAGATAGATTGTAAATTATTACACATG
Downstream sequence (upto 100nt)
AGTTTTCTTTTTTATGTTTGCACATATTTCCTATACCTTCCCATCTGAAACTTCTTATAGACCAATTGTATTTTCATCATGAAACCAATTTGGAAGTTAG
Mature tRNA
GCCCGUCUACCUCAGUUGGUAGAGCGCAAGGCUGUUAAUCUUGUGGUCUUGGGUUCGAGCCCCAAGGUGGGCG
Intron Sequence
GGATGTGTTTGGTTCACTCCATGGGCAACCTTGTCTGGCCCAAGCAATCCCAGCCACAGAGGTTCCAAATGGACGCCCGAGATCGCTGCTTGGTCCAAGCAGGTTTGCCTATGTAGTGAACCATACACACCATCA
Intron Position38-172
Infernal Score56.0
HMM Score41.50
Secondary structure Score14.50