Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID89804_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3B.trna595
tRNA locuschr-3B : 717990798 - 717990878 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAG isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
GTCAAGATGGCCGAGTTGGTCTAAGGCGCCAGTTTCAGGTATTGTTCCGAAAGGGCGTGGGTTCAAATCCCACTCTTGACA
tRNA secondary structure
>>>>>>>..>>>............<<<..>>>>.......<<<<............>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACCAAATAATTCAAAAGTGAAATGGAAACGAATATGATAGTTCCAGAGTTTGGGATATAGTTCGATACAATAAACACTAGTTTCGTGAAAGTAAACAAAT
Downstream sequence (upto 100nt)
ACTTTTTCTTTTTCTTTTTTTCATTGCTGCGCCTGATAAAATCTCGTGTGATGTTCGTATTCTAGGGGATAGTTCTCTTTTGCTTAGTTCCTTAATAATA
Mature tRNA
GUCAAGAUGGCCGAGUUGGUCUAAGGCGCCAGUUUCAGGUAUUGUUCCGAAAGGGCGUGGGUUCAAAUCCCACUCUUGACA
HMM Score49.80
Secondary structure Score8.10