Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID89746_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3B.trna527
tRNA locuschr-3B : 659071494 - 659071575 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GACGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGTTCGAATCTCTCAGGCATCG
tRNA secondary structure
>>.>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<.<<.
Upstream sequence (upto 100nt)
CGCACGCCGCCGCTGTCCATGCTGGTGGGGGTTTCGGGGAACGAATCAGGGTTAGATGTTGTACTTTTAAAAGATGGAAGGTTGCATTACCGTCAATAAA
Downstream sequence (upto 100nt)
TCAGTTTTTTTTTCATTTTTTTCTCTGTCTTATTTAATCCTACTTCATTTTTCTGTCTGTCTTATTTCTATCTGCTCTATTTTCTCTGTGTCTTATTTAT
Mature tRNA
GACGCUUUGGCCGAGUGGUUAAGGCGUGUGCCUGCUAAGUACAUGGGGUUUCCCCGCGAGAGUUCGAAUCUCUCAGGCAUCG
HMM Score41.40
Secondary structure Score30.30