Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID89597_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3B.trna350
tRNA locuschr-3B : 769380437 - 769380364 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGATGTAGCTCAATTGGTAGAGTACTAATCAATGAGGAATAGAGGCATGGGGTTCGATTCCTCGCATCTCCT
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>............<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTTGCAACGGATCCAAAGTAGAATAATACATGTTCACAAACTGAAAGAAGACCACTCTAGTTTTGGTGTGTACATATAAATAACTGCAATGCATGTGAAA
Downstream sequence (upto 100nt)
AATTGGGTTTTATCGCTGTTTTCCCCCTTTTTTTAGGTGGTGTCGCTGTTTTTTCCTGCTAAATTTAATCATCCGTCAACAAGAAAAAAAATCTATGCGA
Mature tRNA
GGGGAUGUAGCUCAAUUGGUAGAGUACUAAUCAAUGAAUAGAGGCAUGGGGUUCGAUUCCUCGCAUCUCCU
Intron Sequence
GGA
Intron Position38-40
Infernal Score29.3
HMM Score21.20
Secondary structure Score8.10