Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID89424_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3B.trna152
tRNA locuschr-3B : 658603858 - 658603682 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCTGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGCTCGAGCCCCATGGCGACCTATATTTTACTTTATTTTTGTATACTCTCTAGGAATCAATTTGCATGTAGTGCATCCAGGAAATAAGAAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...............................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTGTTTATTTCCTCTTTTGCTAGGGGGAGTAGGATGCAGTGACACCTTCTGTGCGTGTCACAAGGAAGATTTACTGAGAAATCAAAACAAGAACAGAAAA
Downstream sequence (upto 100nt)
ACCTATTTTTTACTTTATTTTTGTATACTCTCTAGGAATCAATTTGCATGTAGTGCATCCAGGAAATAAGAAACCGATGTGTCAGGGGTTGGGTGCGACA
Mature tRNA
GCCUGUCUAGCUCAGUUGGUAGAGCGCAAGGCUCUUAACCUUGUGGUCGUGGGUUCGAGCCCCACGGUGGGCG
Intron Sequence
ACCTTGTGGTCATGGGCTCGAGCCCCATGGCGACCTATATTTTACTTTATTTTTGTATACTCTCTAGGAATCAATTTGCATGTAGTGCATCCAGGAAATAAGAA
Intron Position38-141
Infernal Score75.4
HMM Score56.40
Secondary structure Score19.00