Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID89243_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3A.trna551
tRNA locuschr-3A : 719265464 - 719265672 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCCGCCTAGCTCAGTTGGTAGAGCTCAAGGTTCTTAGCACATGGTTTGTTTGCTACCTGAGCAAACTTGCCTTTCCTGCAGCCATCCTAGCCCCACGATTTAGGACGAGTGGGCCGGAGATCACTGTTTGGAATGGTAGGACTGCCTAGGTAGCACACCATAGAGGCTCATTACCTTGTGGTCTTGGGTTCGAGCCCCAAGGCGGGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...............................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTAGGTTGTTCAACATTTATGGTAATATGGGTGAACCTAAGGGATTGATTATATCTTCCTTTTAATTATATAATAGATAGATTGTCAAAAAGATCACATT
Downstream sequence (upto 100nt)
ATTTCTTTTTGGTGCTTCCACGTATTTTATTTTCTTTCTGGATTTGTACCCTTTTTTGACCAATTATTTTAGGTATTTGGGATAACTTAGAGTTATGTAT
Mature tRNA
GCCCGCCUAGCUCAGUUGGUAGAGCUCAAGGUUCUUAACCUUGUGGUCUUGGGUUCGAGCCCCAAGGCGGGCA
Intron Sequence
GCACATGGTTTGTTTGCTACCTGAGCAAACTTGCCTTTCCTGCAGCCATCCTAGCCCCACGATTTAGGACGAGTGGGCCGGAGATCACTGTTTGGAATGGTAGGACTGCCTAGGTAGCACACCATAGAGGCTCATT
Intron Position38-173
Infernal Score71.0
HMM Score42.80
Secondary structure Score28.20