Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID88189_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2B.trna337
tRNA locuschr-2B : 421186834 - 421186755 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
GGTACATTGCTCAGTTGGTAAAGCACAAGGCTCTTAACCTTGTGGACATGGATTCAAGCCCCATGATGGGGGTTATATCA
tRNA secondary structure
>>>.>>>.>>>..........<<<.>>>>>.......<<<<<.....>>>>.........<<<<.<<<........<<<.
Upstream sequence (upto 100nt)
AGACCCGACTCATCACATTGTAATGAGCCGGCCCTTGGGGGCTACCAATTTCCTCTGTCAACAATTTAAGGTACAAAGCTTTTTATCCATTATATTGAAG
Downstream sequence (upto 100nt)
TATGCTGTTATTTTCATTGAAGTATATATCAAGTCCCAACTCAATATTATCTTACTGAGCCGGCCCTTGGGGGCTATACATCATTGCTCAAATCTACATG
Mature tRNA
GGUACAUUGCUCAGUUGGUAAAGCACAAGGCUCUUAACCUUGUGGACAUGGAUUCAAGCCCCAUGAUGGGGGUUAUAUCA
HMM Score29.60
Secondary structure Score8.40