Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID87304_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-1D.trna314
tRNA locuschr-1D : 462399059 - 462398823 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderAAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAC isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGTTTCGTGGTGTAGTTGATTATCACGTCAGTCTAACACACTGAGGCGCCGCTTGGTATGGGTGTAAATTTATACACCCGGAATTAATCTACAGATGTATATTACCGGCCGTCCTTGATTTTCGGCTGGAAAATGAAACGACGCCCTGAGGTCCGTATCTTTTACCGGTGTATTTAGTAGCGAACCGACAATCCAAGCGGGGCCTGAAGGTCTCCGGTTCGAACCCGGGCGAAGCCA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>............................................................................................................................................................................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTTTTTCTTGTTACACTGGTTTGTCTACCCAACCCAGTGGTCGGCACAGTAAGCAATAACCCCCTGTCTATATAACCTTCGTGGATAATTGCAGCACAAA
Downstream sequence (upto 100nt)
ATGTATTTTTTCTCTTTTTTTTATGCAATTTCAAGAGCGAGAAAAAAAAAGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG
Mature tRNA
GGUUUCGUGGUGUAGUUGAUUAUCACGUCAGUCUAACAGCCUGAAGGUCUCCGGUUCGAACCCGGGCGAAGCCA
Intron Sequence
CACTGAGGCGCCGCTTGGTATGGGTGTAAATTTATACACCCGGAATTAATCTACAGATGTATATTACCGGCCGTCCTTGATTTTCGGCTGGAAAATGAAACGACGCCCTGAGGTCCGTATCTTTTACCGGTGTATTTAGTAGCGAACCGACAATCCAAGCGGG
Intron Position39-201
Infernal Score39.8
HMM Score25.70
Secondary structure Score14.10