Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID86202_PtRNAdb
Plant SourceTriticum aestivum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-1A.trna111
tRNA locuschr-1A : 278507089 - 278507272 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Triticum_aestivum plant by clicking on the isoacceptor]

IsodecoderGAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAG isodecoder in Triticum_aestivum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTTCTGGTAGCTCAGCTGGTTAGAGCAAAACAAGCAACGGATTGAGAAACTAGCGCGAAAGCCATTGCGCGTTAGCGCATCCGTTTTCTTGCTGGACTGCAAATCCTTTTTTTCTTGTTTCAGTGGGAAGAGCAAGGGGCATTGCCCTTGAAATCCTTCAGTGGTTCGAATCCACATCTGAGCG
tRNA secondary structure
>>>>.>>..>>>>.........<<<<............>>>................................................................................................................<<<....>>>>.......<<<<.<<.<<<<.
Upstream sequence (upto 100nt)
CGAGGGCCGTCCAGTCCCTGGCCGGCTCTCGGTTCTTGAGCAAGCTCCTCCACTGCAGGTAGGATGCTCATAGATGAAGAAAAGAGACTTTAGGCAAGTG
Downstream sequence (upto 100nt)
TCTTTTTTTCGGTATGCCACTCCGCGAGCAAGGAGCGCCGCGAGGAGAGCGAGAGAACGAAGTGGGCTTTGGTGATGTCGGAATTTGAACCTATTTTATA
Mature tRNA
GUUCUGGUAGCUCAGCUGGUUAGAGCAAAACAAGCAACGGAUUGAGAAUCCUUCAGUGGUUCGAAUCCACAUCUGAGCG
Intron Sequence
AACTAGCGCGAAAGCCATTGCGCGTTAGCGCATCCGTTTTCTTGCTGGACTGCAAATCCTTTTTTTCTTGTTTCAGTGGGAAGAGCAAGGGGCATTGCCCTTGAA
Intron Position48-152
Infernal Score24.8
HMM Score15.70
Secondary structure Score9.10