Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID85719_PtRNAdb
Plant SourceTrifolium pratense     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna89
tRNA locuschr-2 : 30454360 - 30454279 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Trifolium_pratense plant by clicking on the isoacceptor]

IsodecoderTGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGA isodecoder in Trifolium_pratense plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTCAATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTTGACG
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TCACAAAAATTTAGAGAACAATTAATAAAATGAAAATAGTCGATTACGATGAATATCACGAAACCAATACATATTACGTATCTTAAACTTAATCACAAGA
Downstream sequence (upto 100nt)
TTTCTTTTTATTTTTTTTAAAATTTGTTTTATCCAATAAATTATTAACCAATTTGAGTCACAATTGCGACCAAACTGATCCACATTAAAAACCTTGATAT
Mature tRNA
GUCAAUAUGUCCGAGUGGUUAAGGAGACAGACUUGAAAUCUGUUGGGCUUCGCCCGCGCAGGUUCGAACCCUGCUGUUGACG
HMM Score43.90
Secondary structure Score35.30