Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID84579_PtRNAdb
Plant SourceSpatholobus suberectus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna5
tRNA locuschr-4 : 5425887 - 5425959 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Spatholobus_suberectus plant by clicking on the isoacceptor]

IsodecoderCGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGC isodecoder in Spatholobus_suberectus plant by clicking on the isodecoder]

tRNA Sequence
GGGGACGTAGCTCATATGGTAGAGCGCTCGCTTCGCATGCGAGAGGCACCGTGTTCGATTCCCCGCGTCTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>.>.......<.<.<<<<<<<<.
Upstream sequence (upto 100nt)
TTGATTATTCAAAAAGGTTTTAACATTTAATGTCCTTAATAAATTGGTTTTCCGTTCCAGTTTAAAAGAACAAAACAAATCTTTGGAACGCGGGCAGCAC
Downstream sequence (upto 100nt)
TTTTTTTGAGCCTAACTTTTGGCTACCATAAAAATGTCATTTCTTAATCGGAAAAAATAAATAAATAACATGTCATCCTCCTACAGTGGAAGCTGAAACA
Mature tRNA
GGGGACGUAGCUCAUAUGGUAGAGCGCUCGCUUCGCAUGCGAGAGGCACCGUGUUCGAUUCCCCGCGUCUCCA
HMM Score40.10
Secondary structure Score10.10