Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID84545_PtRNAdb
Plant SourceSpatholobus suberectus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna28
tRNA locuschr-4 : 71501064 - 71501135 (+)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Spatholobus_suberectus plant by clicking on the isoacceptor]

IsodecoderATT

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATT isodecoder in Spatholobus_suberectus plant by clicking on the isodecoder]

tRNA Sequence
TCCTTAGTAGCTCAGTGGTAGAGCAGTCGGCTATTAACTGACTAGTCGTAGGTTCAAATCCTACTTGGGGAG
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAATACAATACACTGCCTTGGTACAACAGAGAAACCGGTACAACATACTGCAGGCACGTAAGTGCAATAGTAACTTTACGCCAATCAAATTTCCCGCTAT
Downstream sequence (upto 100nt)
ATTTTGTTGATTTCGAAATCTGTAATTCAAAATGAATGAAAGGGTTTGCTTTGATCGTTAAGAGTAGATAACCCATTTCTCTTGTCTTTGTTTCTATTAC
Mature tRNA
UCCUUAGUAGCUCAGUGGUAGAGCAGUCGGCUAUUAACUGACUAGUCGUAGGUUCAAAUCCUACUUGGGGAG
HMM Score46.90
Secondary structure Score18.30