Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID84453_PtRNAdb
Plant SourceSpatholobus suberectus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna12
tRNA locuschr-3 : 44414503 - 44414576 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Spatholobus_suberectus plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Spatholobus_suberectus plant by clicking on the isodecoder]

tRNA Sequence
CGCCGAGTAGAGCAACTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACAGGTTCAAATACTGTCTCCGCAA
tRNA secondary structure
.>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>.........<<<<<<<.<<..
Upstream sequence (upto 100nt)
TAGTATTATTCTATATATGTATATATTTGATAAATATATATGGTAAAGGGATGCATTCCATCTTTGTTTTTGTCCATTAGTTATCAATTCTTATCTTTAT
Downstream sequence (upto 100nt)
CATTTTGACTTTGAAAAAAAAAGGGGGGGGGGGGAGGGGGGTATTATACTATCAAAGTCAATTCTATTCCATTTTTCATACTATGACTATTAAATACATA
Mature tRNA
CGCCGAGUAGAGCAACUUGGUAGCUCGCAAGGCUCAUAACCUUGAGGUCACAGGUUCAAAUACUGUCUCCGCAA
HMM Score22.70
Secondary structure Score20.20