Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID84436_PtRNAdb
Plant SourceSpatholobus suberectus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna52
tRNA locuschr-2 : 64347701 - 64347618 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Spatholobus_suberectus plant by clicking on the isoacceptor]

IsodecoderCAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAA isodecoder in Spatholobus_suberectus plant by clicking on the isodecoder]

tRNA Sequence
GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGGGAGAGGGCGTGGGTTCAAATCCCACTTCTGACA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>><<<...<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AATAATTAATAACTACAAGGTGGCACTGGGATGGGAATAAAAAACTCAAAGTAAAAATGTTAAGAAACGAAGCAAAAATATAATAAAAATAAACAAAAGC
Downstream sequence (upto 100nt)
CTTATTTTTATGTTTTTGAAAACTTTTCTCTCAAAAGGTTTAGGGCTATATTGGATTGTGGCCCATTCCACATCCACTCTCCCGCTGGGCCCAGTTGAGG
Mature tRNA
GUCAGGAUGGCCGAGUGGUCUAAGGCGCCAGACUCAAGUUCUGGUCCUCGGGAGAGGGCGUGGGUUCAAAUCCCACUUCUGACA
HMM Score54.90
Secondary structure Score23.10