Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID83695_PtRNAdb
Plant SourceSolanum pennellii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-8.trna38
tRNA locuschr-8 : 68424000 - 68423930 (-)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Solanum_pennellii plant by clicking on the isoacceptor]

IsodecoderGCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCC isodecoder in Solanum_pennellii plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCACTAGTGGTCTAGTACTAGAATAGTACCCTGCCACGGTACAGACTCGGGTTCGATTCCCGATTGGTGCA
tRNA secondary structure
>>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTTTGTGAGATTTCATTCAATATAGTTTTGTTGGGAAATTGATTGTTGAAAAATAATAAATACATAAAATATAAATATAATGAGAAAGTTCAAACAAGTA
Downstream sequence (upto 100nt)
TTTCAAATCAATGACATTTACTTGCACAAATTGTGAACGATTGAGTCATCACGGTACATCTGATTTATAAGATGAGATAATGTGTATTTGAGCTCTGTAA
Mature tRNA
GCACUAGUGGUCUAGUACUAGAAUAGUACCCUGCCACGGUACAGACUCGGGUUCGAUUCCCGAUUGGUGCA
HMM Score18.60
Secondary structure Score20.70