Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID82509_PtRNAdb
Plant SourceSolanum lycopersicum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna7
tRNA locuschr-4 : 3878312 - 3878384 (+)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Solanum_lycopersicum plant by clicking on the isoacceptor]

IsodecoderCCG

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCG isodecoder in Solanum_lycopersicum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GATTACATAGCGGAGTGGATATAGCGTTAGACTCCGAATCTAAAGGCCGTGGGTTCGAATCCCACTGTGATCA
tRNA secondary structure
>>>>>>>..>>.>........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACAGAGTAGTACTGAAATGAGTGTTTTTTGTCCCTTTTGATGGTAGTGGAAATTTTGGTAAAGGATAGTTATGAGGAAATGGAGAAGATGGTAACTAAGT
Downstream sequence (upto 100nt)
CTGCCTACTTTTTTTTCTTTTATAATTTGTGTTTGGTTTTGGAGATCGGTGTGAGTTTATATATACTTGGTTCCTGTTTAGGGAGTAGATTTTCAAATTT
Mature tRNA
GAUUACAUAGCGGAGUGGAUAUAGCGUUAGACUCCGAAUCUAAAGGCCGUGGGUUCGAAUCCCACUGUGAUCA
HMM Score60.40
Secondary structure Score10.50