Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID81914_PtRNAdb
Plant SourceSetaria viridis     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-9.trna27
tRNA locuschr-9 : 10403844 - 10403917 (+)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Setaria_viridis plant by clicking on the isoacceptor]

IsodecoderAAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAC isodecoder in Setaria_viridis plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
AGTGTTGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCGGGCGACGCCA
tRNA secondary structure
.>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Upstream sequence (upto 100nt)
TGCGATTATGAACTAAATACCAAAGGTTATTTCAGCTTTTTCGAGATAGAAATTTGAATAATATTAAAATATTATATGTCAAGCTTAATAAATCTAGGAT
Downstream sequence (upto 100nt)
CTTTTATTTATTTATTTTATTTTTGCTCCTTCAGCAGTTTAACGACCTGGGCCAACGACTGTGCTGCCTTCGGGCTCTCCTGATCAAGATTTTCTATTTT
Mature tRNA
AGUGUUGUGGUGUAGUUGGUUAUCACGUCAGUCUAACACACUGAAGGUCUCCGGUUCGAGUCCGGGCGACGCCA
HMM Score44.30
Secondary structure Score20.20