Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID81879_PtRNAdb
Plant SourceSetaria viridis     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-8.trna33
tRNA locuschr-8 : 38468099 - 38468032 (-)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Setaria_viridis plant by clicking on the isoacceptor]

IsodecoderTTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTG isodecoder in Setaria_viridis plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GTGGCGCAGTTGGTTAGCGCGTAGGTGTCTTGAGTTATCCCTGAGGTCAAGAGTTCGATCCCCTCTCA
tRNA secondary structure
>..>>>>.........<<<<.>>>>.>...........<<<<<......>>.>.......<.<<..<.
Upstream sequence (upto 100nt)
AACCATGCATACGGACTGACTAAATAAATATTTTAGATCATTACCATCCAACTGGCGCCACTCATAAGGCACACAACAACAGCAAGGGAACAACGAGTTA
Downstream sequence (upto 100nt)
CCCCAATTAAGTTTGGCTAAGCCATGATGAAATGCCCTGTGACACATGGGTCGTCACGATGTTGCATCTTCCGAGATTGATGCCGGGCACCTCTGAGCTT
Mature tRNA
GUGGCGCAGUUGGUUAGCGCGUAGGUGUCUUGAUCCCUGAGGUCAAGAGUUCGAUCCCCUCUCA
Intron Sequence
GTTA
Intron Position34-37
Infernal Score22.7
HMM Score11.40
Secondary structure Score11.30