This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.
| PtRNAdb ID | 81342_PtRNAdb |
|---|---|
| Plant Source | Setaria italica | Phanerogamae -->Monocot |
| Genome level | Nuclear |
| tRNA ID | chr-VI.trna6 |
| tRNA locus | chr-VI : 5285908 - 5286027 (+) |
| Isoacceptor | Phe [NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Setaria_italica plant by clicking on the isoacceptor] |
| Isodecoder | GAA [NOTE: User can view the results of the consensus based study of all the tRNAs of GAA isodecoder in Setaria_italica plant by clicking on the isodecoder] |
| tRNA Sequence B-Box | GTTCTGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAATCCTTTTTAGCTTGTTTCAGTGGGAAGAGCAAGGGGCATTGCCCTTGAAATCCTTCAGTGGTTCGAATCCACATCTGAGCG
|
| tRNA secondary structure | >>>>.>>..>>>>.........<<<<..>>>>.........................................................<<<<...>>>>.......<<<<.<<.<<<<. |
| Upstream sequence (upto 100nt) | CGAGGGCCGTCCAGTCCCTGGCCGGCTCTCGGTTCTTGAGCAAGCTCCTCCACTGCGGGTAGGATGCTTATAGATGAAGAAAAGAGACTTTAGGCAAGTG |
| Downstream sequence (upto 100nt) | TCTTTTTTTTTTCGGTATGCCGCTCCGCGAGCAAGGAGCGCCGCGAGGAGAGCGAGAGAACGAAGTGGGCTTTGGTGATGTCGGAATTTGCACCTATTTG |
| Mature tRNA | GUUCUGGUAGCUCAGCUGGUUAGAGCAAAGGACUGAAAAUCCUUCAGUGGUUCGAAUCCACAUCUGAGCG |
| Intron Sequence | ATCCTTTTTAGCTTGTTTCAGTGGGAAGAGCAAGGGGCATTGCCCTTGAA |
| Intron Position | 39-88 |
| Infernal Score | 35.6 |
| HMM Score | 28.90 |
| Secondary structure Score | 6.70 |
Statistical information of PtRNAdb
Methodologies opted for PtRNAdb development
How to explore PtRNAdb Database
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© Developed by Dr. Shailesh Laboratory | National Institute of Plant Genome Research (NIPGR), New Delhi, India | DBT
