Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID79971_PtRNAdb
Plant SourceSchrenkiella parvula     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna35
tRNA locuschr-3 : 14637735 - 14637814 (+)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Schrenkiella_parvula plant by clicking on the isoacceptor]

IsodecoderTCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCT isodecoder in Schrenkiella_parvula plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AAATCTGTAAGCTCAAAATGGTAGAGCGCTCTTCTTCTGTTGAAGTTGAGAGGTTGGTGGTTCGAATCCACCCTGATTTG
tRNA secondary structure
>>>>>.>...>>>>.........<<<<.>>>>>..........<<..<<<.....>>>>>.......<<<<<<.<<<<<.
Upstream sequence (upto 100nt)
TGAAGGTATTTGACTTATTTTGATCCCCAAGCTATCTCAGTGAAGTTGATAGTGTGGTTTTTAAGGTCCATGAGCTCAATTGGAATAATGTTGTGTTGAT
Downstream sequence (upto 100nt)
CATTTGCTTGTTACTGTGTAATTATAAGTATACTTTAATTTATTACGTGTCCTCGATCTACTTTTTGGTTTTCTTAATTCTGCTAATCCTTTTTAAGGTC
Mature tRNA
AAAUCUGUAAGCUCAAAAUGGUAGAGCGCUCUUCUUCUGAAGUUGAGAGGUUGGUGGUUCGAAUCCACCCUGAUUUG
Intron Sequence
TTG
Intron Position40-42
Infernal Score35.6
HMM Score12.70
Secondary structure Score22.90