Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID79803_PtRNAdb
Plant SourceSchrenkiella parvula     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna39
tRNA locuschr-1 : 9294667 - 9294738 (+)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Schrenkiella_parvula plant by clicking on the isoacceptor]

IsodecoderTGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGG isodecoder in Schrenkiella_parvula plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTTCCGAGTTCGATTCTCCGAATGCCCC
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
Upstream sequence (upto 100nt)
GCAAGAGAATTGTGATTAAGCATCAACACAAAAGCGAAGGGTTATTGTACAGAAAGGAGAGAATGCAAATAGACGGCTTTAACTGAACAATCTGAAAACA
Downstream sequence (upto 100nt)
ATTGACTTTTTTTGTAAAACATATGTTCTAAATGCCATCTAACATCTACTAAATCGTAACAGGCAATCACCTTTACGATTGAGCCCTGAAAGTCAACTAA
Mature tRNA
GGGCAUUUGGUCUAGUGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUUCCGAGUUCGAUUCUCCGAAUGCCCC
HMM Score31.00
Secondary structure Score24.80