Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID78911_PtRNAdb
Plant SourceSaccharum spontaneum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5A.trna32
tRNA locuschr-5A : 83789358 - 83789625 (+)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Saccharum_spontaneum plant by clicking on the isoacceptor]

IsodecoderAGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGG isodecoder in Saccharum_spontaneum plant by clicking on the isodecoder]

tRNA Sequence
GGGGGTGTAGCTCAAATGGTAGAGCGCTCGCTTAGGTTGCGAGAGGCACGGGGATCGATACCCCGCATCTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>..........................................................................................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TCGATCAACTAACTGACCAATCCGGCCCATACGTTGTGCTGACAAGCATCACTGCACAAATCAAAATTCAGCCTGTCTTATTAGGCACTAAATTCCGTTA
Downstream sequence (upto 100nt)
CAGTACAATTTATTTTTATTTTTCGTTTTTGGCTTTTGTAATAGTTTCTTTTTCATTTTTGGTTTTTGTATGGCTGGCGTAATCCTATCCGAACTTTATA
Mature tRNA
GGGGGUGUAGCUCAAAUGGUAGAGCGCUCGCUUAGGUUGCGAGAGGCACGGGGAUCGAUACCCCGCAUCUCCA
Intron Sequence
CAGTCTCAGTGAGATTTCATGTCACTGTTTTCAACACATTCAGATTTTGGAAATAGTGCAGAAGAGTTTCATCCCCATGAAACTCTCTCTACTCCCATGAAACTCTTATTATCTCTCTTCATTAATATAGTGCCACATCATCATAATTAATGTCTATGAAACTCTGATGAAACCCCATTGAGACTGGCCTTAGCA
Intron Position38-232
Infernal Score39.6
HMM Score17.50
Secondary structure Score22.10