Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID78464_PtRNAdb
Plant SourceSaccharum spontaneum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3C.trna23
tRNA locuschr-3C : 32048938 - 32049094 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Saccharum_spontaneum plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Saccharum_spontaneum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTGTCTGCAGATCAGCTGGTTCGAATCCGGCAGGTCGGATTCTTTTTTTCTTTTTTTTCAAAAAAAAAATGTAGATCGAGGTCTGCTTTGCAGGTCGCTGGTTCGAATTCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>.>........................................................................................<.<<<........>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TAATCCTGAATGATCATTGCCTCACGCGATGAGAATGTGCAGCATATTCTATTTCCCTGAACGTGGATAATAGGAGAACAATTCTTGCCAAATAACGCAT
Downstream sequence (upto 100nt)
TTCTTTTTTTCTTTTTTTTTCAAAAAAAAATGTAGATCGAGGTCTGCTTTGCTCCAGCTAGAATAATCCAGAAAATTTAAAATATTCATCCATACACCAT
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGCUGCUUUGCAGGUCGCUGGUUCGAAUUCGGCAGGUCGGA
Intron Sequence
TGTCTGCAGATCAGCTGGTTCGAATCCGGCAGGTCGGATTCTTTTTTTCTTTTTTTTCAAAAAAAAAATGTAGATCGAGGT
Intron Position38-118
Infernal Score47.1
HMM Score28.70
Secondary structure Score18.40