Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID7832_PtRNAdb
Plant SourceArachis hypogaea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B03.trna37
tRNA locuschr-B03 : 29214291 - 29214360 (+)
IsoacceptorCys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Cys isoacceptor in Arachis_hypogaea plant by clicking on the isoacceptor]

IsodecoderGCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCA isodecoder in Arachis_hypogaea plant by clicking on the isodecoder]

tRNA Sequence
GGATCTATAGCTCAGTGGTAGAGCATTTGACTGCAAATCAAGAGATCCCTGAGATACCTCAGGGGATATA
tRNA secondary structure
>.>>>>...>>>>.......<<<<.>>>>>.......<<<<<......>>>>>....<<<<<.<<<<.<.
Upstream sequence (upto 100nt)
AAAAAAAAAAAAAAAGAGAAAGAAGAGAGAAGAGAAAAGGGAAAAGGGAAGACAAAAGCTTCCACCTCCAAGTCATGGGAGATGGAGAGATTAATGTAAA
Downstream sequence (upto 100nt)
TTTTCCCCCACACAATTATTGGGAGCAACTAAGGATAGGAGCACCAAAATCACTAGGGATCAAGCCACAAATGCAAGGAAGAGACATAGAAGAGCTCAAG
Mature tRNA
GGAUCUAUAGCUCAGUGGUAGAGCAUUUGACUGCAAAUCAAGAGAUCCCUGAGAUACCUCAGGGGAUAUA
HMM Score19.30
Secondary structure Score6.10