Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID77620_PtRNAdb
Plant SourceSaccharum spontaneum     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-1A.trna57
tRNA locuschr-1A : 103888386 - 103888315 (-)
IsoacceptorCys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Cys isoacceptor in Saccharum_spontaneum plant by clicking on the isoacceptor]

IsodecoderGCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCA isodecoder in Saccharum_spontaneum plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGTCCATAGCTCAGTGGTAGAGCAATTGACTGCAGATCAATAGGTCACCGGTTCGAACCTGGTTGGGCCCT
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTCGCATCCGCCGTCCGAGCAACTAGCATCATGCTACCATGCCGAAACTGTTCTGCGTCATATTGTATGAATATTCCTATTTGTGCCCATTGTCAACAAA
Downstream sequence (upto 100nt)
TGGTGCATATCTTTCCTTTTTTTTCATATTTATTTAGTTTCCCTCAAATCCGCAAGGAGATTTTTGAGCCTGTCAATTCCATTCCGGTTTCTCTTTTCTC
Mature tRNA
GGGUCCAUAGCUCAGUGGUAGAGCAAUUGACUGCAGAUCAAUAGGUCACCGGUUCGAACCUGGUUGGGCCCU
HMM Score52.90
Secondary structure Score21.60