Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID77471_PtRNAdb
Plant SourceRosa chinensis     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna77
tRNA locuschr-6 : 57181997 - 57181913 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Rosa_chinensis plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Rosa_chinensis plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGCGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTTCTGAGTTATCCTGAGGTCGAGAGTTCGAGCCTCTCTCGCCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>....................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CATCTGGGAATGTTCTAAAAAGAAAAGTAGGACCCAGCTGAATTACTGTGATGACTTTTCTGCTAATATATACTTTATGGTTTGCAGTTAGCATCAACAG
Downstream sequence (upto 100nt)
ACCAATTTTTTTTTTTTTTCACTTCCTAATTTTTTTTTTTTTTTTTGGGGTGGGGGGCGTCCACTTTCTTTGCTTTCATGGTTTTTCCATCCTCCACTTT
Mature tRNA
GGGGCGGUGGCGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCGCCCCA
Intron Sequence
GCTTCTGAGTT
Intron Position39-49
Infernal Score64.5
HMM Score41.30
Secondary structure Score23.20