Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID76952_PtRNAdb
Plant SourceRosa chinensis     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna32
tRNA locuschr-1 : 54350942 - 54351015 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Rosa_chinensis plant by clicking on the isoacceptor]

IsodecoderCGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGC isodecoder in Rosa_chinensis plant by clicking on the isodecoder]

tRNA Sequence
ATTGTTGTAGTCTAATTGGTTAGGATATTTGGTTCGCATCTAAAAAGACCTGGGTTCAAGTCCCAGCAATGGAA
tRNA secondary structure
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Upstream sequence (upto 100nt)
ATTGGTGAGTAACAGAATATTCCAAAATAGAGACAGATTCATTTAGAGTCATTAATTGAAACATGCATTAATATAACATTATAACAAAATAATCAATAAA
Downstream sequence (upto 100nt)
TAATAATTTTGTTATTTTTTCACAAACGACATAATCATATGAGGTAGATATGACAAAAATAATCATAAATAACAAATGTTCATTATGATCACATAAAATA
Mature tRNA
AUUGUUGUAGUCUAAUUGGUUAGGAUAUUUGGUUCGCAUCUAAAAAGACCUGGGUUCAAGUCCCAGCAAUGGAA
HMM Score37.20
Secondary structure Score10.90