Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID768_PtRNAdb
Plant SourceActinidia eriantha     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-V.trna7
tRNA locuschr-V : 20767837 - 20767907 (+)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Actinidia_eriantha plant by clicking on the isoacceptor]

IsodecoderCTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTG isodecoder in Actinidia_eriantha plant by clicking on the isodecoder]

tRNA Sequence
GGTCCCATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGATTCAAGTCTCGGTGGGACCT
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>........<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTCAAACGAGTTGAGCGGTCGGAAGTGCCAAATGTACGTACCAATATCAGGCGACAGAAGAATCAATAAGTTTTTGATGTACACCAGCACAAGCAACTCT
Downstream sequence (upto 100nt)
CAAATGGCCGCTATTGCTTTTATTTAATTTTTTTATTTTTTCTAAGCTGTTGCATGAAGCATATGGCTGGTTGGGAAACTGATATCACTGTTAAAGGTAG
Mature tRNA
GGUCCCAUGGUCUAGUGGUCAGGACAUUGGACUCUGAAUCCAGUAACCCGAUUCAAGUCUCGGUGGGACCU
HMM Score34.80
Secondary structure Score23.50