Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID76460_PtRNAdb
Plant SourceRaphanus sativus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG5.trna23
tRNA locuschr-LG5 : 7347468 - 7347541 (+)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Raphanus_sativus plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Raphanus_sativus plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GTCCTATTAGCTCAGTTGGTTAGAGCGCCGTGCTAATAACGCGAAGGTCACAGGTTCGAAACCTGTATGGGCCA
tRNA secondary structure
>.>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
ACATATTTTTACTCAAGGACACATTCACTCAAACCATTATTTAATTTTAAATCTGATTAGTTAACAAATGGCTTTCGTAGACCGTATTAGAAACACAAAA
Downstream sequence (upto 100nt)
CTCTAGTTTTTTTCCTTTTTATCACTCATTCTTGGTGATTTAGGAGGATTTGTCAGGCCTTGAACGAGCCAAGCTAATTCTCTTAAACAGCAAACGCACA
Mature tRNA
GUCCUAUUAGCUCAGUUGGUUAGAGCGCCGUGCUAAUAACGCGAAGGUCACAGGUUCGAAACCUGUAUGGGCCA
HMM Score53.40
Secondary structure Score12.40