Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID76452_PtRNAdb
Plant SourceRaphanus sativus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG5.trna173
tRNA locuschr-LG5 : 698662 - 698591 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Raphanus_sativus plant by clicking on the isoacceptor]

IsodecoderTTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTC isodecoder in Raphanus_sativus plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TCCGATGTCGTCCAGCGGTTAGGATATCTGGCTTTCACCCAGGAGACCCGGGTTCGATTCCCGGCATCGGAG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AACTCTAAAACAATGTCACAAGTCTAATCTGGAGGCAAATTCACCTGTTTTCCTTTCAGAGAAGGATGATTTTGTTAAGCCAACTGAACCTAACATCTAA
Downstream sequence (upto 100nt)
CTTTTTGCAAAAGAGTCCAACAAATTTTTGCACAGAACGTTTGATGCATTCAAGGGATGCGTGGTTTGTATCTTTTTTTATTTGCGGTTTGTACAAAACT
Mature tRNA
UCCGAUGUCGUCCAGCGGUUAGGAUAUCUGGCUUUCACCCAGGAGACCCGGGUUCGAUUCCCGGCAUCGGAG
HMM Score45.30
Secondary structure Score24.60