Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID76309_PtRNAdb
Plant SourceRaphanus sativus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG4.trna37
tRNA locuschr-LG4 : 16289604 - 16289685 (+)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Raphanus_sativus plant by clicking on the isoacceptor]

IsodecoderTGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGG isodecoder in Raphanus_sativus plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTACGTTCGGTTTAGTGGTAGAATTCTCGCTATGGGTGCGAGAGAGTGCGAGAGGTTCCGAGTTCGATTCTCGGAACGTCCC
tRNA secondary structure
>.>>>>>..>>>>.......<<<<.>>>>>.................<<<<<.....>>>>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
TCAATACCTTGAGGATGTTCGAGTTAATTGGCTGCAATAGATCAACAACAAAATAGACATTAATCGAAGTTAAATTATATACAAGTTAGAAAAATACCAA
Downstream sequence (upto 100nt)
AGTTTTTTGTTCATTTTGCGTTGATAATGTGGTGAGTTATGAAGAGAAAAACTTACTGCCCGTTTAGGAAGTCCCACGGACCAGCTCAGCAAGCAGTAGA
Mature tRNA
GUACGUUCGGUUUAGUGGUAGAAUUCUCGCUAUGGGUGCGAGAGGUUCCGAGUUCGAUUCUCGGAACGUCCC
Intron Sequence
TGCGAGAGAG
Intron Position37-46
Infernal Score34.1
HMM Score16.40
Secondary structure Score17.70