Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID76133_PtRNAdb
Plant SourceRaphanus sativus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG3.trna54
tRNA locuschr-LG3 : 22830044 - 22830126 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Raphanus_sativus plant by clicking on the isoacceptor]

IsodecoderTAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAA isodecoder in Raphanus_sativus plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCAGGTTTGCCCGAGTGGTTAAGGGGGAAGACTTAAGTTCTTCTGCACATAAGTGCGCGTGGGTTCGAACCCCACAGCCTGCA
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CATTGTATATTAATTCAACATGCAATTTATGAGAATGAACCACACATGGCACCATGACCTTATAGATTTATTGATGTGTTTTAACATTATATAATCATAT
Downstream sequence (upto 100nt)
TTTTTATTCAATTTCATATTCAATTTTGATTCAGTTTCATTTTGATAGTTAAAATTTTATTTTTATTTATGACTCGATAAGATCTTAAGTTAGGAAAAAA
Mature tRNA
GCAGGUUUGCCCGAGUGGUUAAGGGGGAAGACUUAAGUUCUUCUGCACAUAAGUGCGCGUGGGUUCGAACCCCACAGCCUGCA
HMM Score35.60
Secondary structure Score37.30