Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID75373_PtRNAdb
Plant SourceQuercus lobata     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna7
tRNA locuschr-2 : 8497444 - 8497522 (+)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Quercus_lobata plant by clicking on the isoacceptor]

IsodecoderTAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAT isodecoder in Quercus_lobata plant by clicking on the isodecoder]

tRNA Sequence
GGATCTATAAGCTCAAACTGGTGAGAGCGCTCAAACTATGTTTGGGAGGTTGGTGGTTCAAGTCCACCTGGATCCT
tRNA secondary structure
>>>>>>>...>>>>..........<<<<.>>>>>..........<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AATGTTACCGCATTAGGCAAAGCTTATTGCAGTGTAATTGTGTTATTATTGGGTTCTACCTGTACTTTTTTTGGTTGAGAAACTGGTTCTACCTGTACAC
Downstream sequence (upto 100nt)
CTATTTTAGAGTTGGATATTTGGACAAATTTAAATACACTTTCTAAGTGTATAAATTCTCCAGTTAAATTTAAACATCCGAATTTTCTTTAGAAAATAAT
Mature tRNA
GGAUCUAUAAGCUCAAACUGGUGAGAGCGCUCAAACUAUGUUUGGGAGGUUGGUGGUUCAAGUCCACCUGGAUCCU
Intron Sequence
TGG
Intron Position41-43
Infernal Score32.1
HMM Score15.00
Secondary structure Score17.10