Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID75070_PtRNAdb
Plant SourcePrunus persica     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-G8.trna41
tRNA locuschr-G8 : 9024379 - 9024031 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Prunus_persica plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Prunus_persica plant by clicking on the isodecoder]

tRNA Sequence
GCATTCATGGCTGAATGGTTAAAGCGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>..........................................................................................................................................................................................................................................................................................<<<<.<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AATCCAAAGAACCTCGATGTCGGCTCTTCACCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGAATTTGGTTATTCACCATGTACGAGGATCCCCGCTAA
Downstream sequence (upto 100nt)
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATTTTATCTCTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCA
Mature tRNA
GCAUUCAUGGCUGAAUGGUUAAAGCGCCCAACUCAUAAUUGGCGAAUUCGUAGGUUCAAUUCCUACUGGAUGCA
Intron Sequence
ATTTGTCACATCCTGGGATTGGCTCTGTCGTAGCACGATATTGTCCACTTTGGGCCCCCATCTCTGCCCTCACGGTTTTGTTTCTAGGAACTCACGAGCAACTTCCCAGTGGGTCATCCATCCTGGGATTGCTCTAGCCCCAACTCGCTTAACTTCGGAGTTCCTATGACTCCGAAGCCAGTGAGCTCCCAAAAGGCCTCGTGCTAGATGGAGGGGGGCATGTACATATAAGGCACATCATTCCCTCTCCGTTGGTCAATGTGTGATGTTACATA
Intron Position38-312
Infernal Score41.4
HMM Score23.70
Secondary structure Score17.70