Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID75009_PtRNAdb
Plant SourcePrunus persica     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-G7.trna15
tRNA locuschr-G7 : 16395986 - 16396069 (+)
IsoacceptorTrp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Trp isoacceptor in Prunus_persica plant by clicking on the isoacceptor]

IsodecoderCCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCA isodecoder in Prunus_persica plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGGTCTGTAAGCTCAAAAATGGTAGAGCGCTCGGGTCCATAGTTGGGCTTTGGGAGGATGGTGGTTCGAATCCACCCAGATCTA
tRNA secondary structure
>>>>>>>...>>>>..........<<<<.>>>>>...............<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CGTAAAACGTAAGCCATATTGGAACGGTGAGTTTCTGGTTTGGCGATGTGATTTTACCCGTTATAGTGGAAGATGCATAGATGTGGGTAATTTGAGATCA
Downstream sequence (upto 100nt)
CAATAACAATACCATTTAATAATGAACACATTACTTTTTATGATCAAACTATGACTTGGTGTGCCATCATCGTTCATGTGTTGTTGGTTTTATGTTTTCA
Mature tRNA
AGGUCUGUAAGCUCAAAAAUGGUAGAGCGCUCGGGUCCAUUUUGGGAGGAUGGUGGUUCGAAUCCACCCAGAUCUA
Intron Sequence
AGTTGGGC
Intron Position41-48
Infernal Score29.7
HMM Score12.30
Secondary structure Score17.40