Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID74768_PtRNAdb
Plant SourcePrunus persica     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-G2.trna74
tRNA locuschr-G2 : 24301574 - 24301489 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Prunus_persica plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Prunus_persica plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGTCCATAGCTCAGTTTTAGAGCATTTGAGCTGCATGTTTGATCTCAGATCATGAGGTCACCAGGTTCGAACCTGGTTGGGCCCT
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>.>>>....................<<<.<.....>>>>.>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACTTTTGAAATTTGAGGAAGAATAATAAAATGCGTATGTATGAGATGAAAGTTGGTGTAATGAGATAAGTAATTTTAATATAAAACTATTACTCATCCAT
Downstream sequence (upto 100nt)
TCTTTATTCAATTATCCAATAATTGTTTTATTTTATTTTAGTTGGTGATTTGCCCCCTGAACTTCTACCTAGCTTTCGATGAATCCTATTTTTTTATTTA
Mature tRNA
GGGUCCAUAGCUCAGUUUUAGAGCAUUUGAGCUGCAAUCAUGAGGUCACCAGGUUCGAACCUGGUUGGGCCCU
Intron Sequence
TGTTTGATCTCAG
Intron Position37-49
Infernal Score34.1
HMM Score15.70
Secondary structure Score18.40