Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID74730_PtRNAdb
Plant SourcePrunus persica     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-G2.trna19
tRNA locuschr-G2 : 23905092 - 23905177 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Prunus_persica plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Prunus_persica plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGAAGGCGCAGTTGGCTAGCGTTTAGGTCTCATAGCGTGGAAAGTGAGTTATCCTGAGGTCGAGAGTTCGAACCTCTCTCTCACCC
tRNA secondary structure
>>>..>>>>.........<<<<.>>>>.........................<<<<.....>>>>>.......<<<<<<<....<.
Upstream sequence (upto 100nt)
ATCGCTCCTCCAATGAAAAAGGTCTTTAAAAAAAAGAACTTTATATAAAAGATTAAAAATTAAAAATTAAAAAGAATAAAAAGTCTGAACATTTCACTCT
Downstream sequence (upto 100nt)
CATTTCATCATTTTTATTTTTGAACAATTAAAGGGTCCAAACAATTCAAGACCTTAATAACGCAAACACTGCTATATTCGAAACTCCAGCAATACAATTC
Mature tRNA
GGAAGGCGCAGUUGGCUAGCGUUUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAACCUCUCUCUCACCC
Intron Sequence
GCGTGGAAAGTGAGTT
Intron Position35-50
Infernal Score34.1
HMM Score17.40
Secondary structure Score16.70