Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID74408_PtRNAdb
Plant SourcePopulus trichocarpa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna26
tRNA locuschr-4 : 24203996 - 24203914 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Populus_trichocarpa plant by clicking on the isoacceptor]

IsodecoderAAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAG isodecoder in Populus_trichocarpa plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TAGTAGATAGTTCAGTAGTAAGAACTTGGGACTAAGGAGTTTGTTCTTCCTATGATTTCAGGTTCGAGCCATGTGGTTGTTAA
tRNA secondary structure
>>>>>>...>>>>........<<<<.>>>>>................<<<<<.....>>>.>.......<.<<.<.<<<<<<.
Upstream sequence (upto 100nt)
TTAAATGTATTAAGAAAAGCAAAAAAAAAAAGCAACACATTTTTTTAAAATTATATAAGCAATATATACATATATGGATTCAATCAACCTGATAATCATA
Downstream sequence (upto 100nt)
TATGATGGCCACTGGAGGCTTACATAATCGTTAATTTCAGGGCCCATGAGATTAATCGAGGTGCATATAAATTGACCCAGACACTTACATTAATTAAAAA
Mature tRNA
UAGUAGAUAGUUCAGUAGUAAGAACUUGGGACUAAGGUUCCUAUGAUUUCAGGUUCGAGCCAUGUGGUUGUUAA
Intron Sequence
AGTTTGTTC
Intron Position38-46
Infernal Score22.5
HMM Score13.50
Secondary structure Score9.00