Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID74136_PtRNAdb
Plant SourcePopulus trichocarpa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-14.trna15
tRNA locuschr-14 : 17734016 - 17734099 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Populus_trichocarpa plant by clicking on the isoacceptor]

IsodecoderAAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAG isodecoder in Populus_trichocarpa plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TAGGTGATGGCTCAGTGATAAGAGCTTGAGATCAAGAGGTTTGTTTTCTCTGTGGTCTCAGGTTCGAGCCCTGTGGTTATTTAT
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...............<<<<.<.....>>>>>.......<<<<..<<<<<<<<.
Upstream sequence (upto 100nt)
CACATCTAAAAAATGCCCTCATTATTACTTACAAATTATTGCCGTAAGGGCTAAATCCCCACACCCTCCATGTAATCAAAATAACATGTTATTAACTATC
Downstream sequence (upto 100nt)
ATGATGGCCACTGGAGGCTTACATGGTCGTTAACTTCAGGGCCCGTGGGATTAGTCGAGGTACGCACAAGCTGGCCCGGACACCCACGTTAAATTAAAAA
Mature tRNA
UAGGUGAUGGCUCAGUGAUAAGAGCUUGAGAUCAAGAUUCUCUGUGGUCUCAGGUUCGAGCCCUGUGGUUAUUUAU
Intron Sequence
GGTTTGTT
Intron Position38-45
Infernal Score29.1
HMM Score16.60
Secondary structure Score12.50