Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID74117_PtRNAdb
Plant SourcePopulus trichocarpa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-13.trna33
tRNA locuschr-13 : 15067310 - 15067219 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Populus_trichocarpa plant by clicking on the isoacceptor]

IsodecoderAGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGA isodecoder in Populus_trichocarpa plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTGGACATGCCGGAGTGGTTATCGGGCATGACTAGAAATCATGTGAAATCATGTGGGCTCTGCCCGCGCAGGTTCGAATCCTGCTGTTCACG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.................<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CATACACTCCAGGTACATGTTTTTTGGGCTCTTGTACGTCTGCTTCATTCTTAAGAAAAGGTCAAGTAAATTGTATATAAATCCGAACGCCTGCAACAAG
Downstream sequence (upto 100nt)
CTTTTCCTTTTCTTTTTTTTTCCTGATCACTTCGCATAATGAGATGTTAACTTCCTGTCGATGTTAAAGTTGATGACAGGCCAGGGTGAGTGCATTGGAT
Mature tRNA
GUGGACAUGCCGGAGUGGUUAUCGGGCAUGACUAGAAAUCAUGUGGGCUCUGCCCGCGCAGGUUCGAAUCCUGCUGUUCACG
Intron Sequence
ATCATGTGAA
Intron Position38-47
Infernal Score68.6
HMM Score34.20
Secondary structure Score34.40